// Copyright 2018 The go-ethereum Authors // This file is part of the go-ethereum library. // // The go-ethereum library is free software: you can redistribute it and/or modify // it under the terms of the GNU Lesser General Public License as published by // the Free Software Foundation, either version 3 of the License, or // (at your option) any later version. // // The go-ethereum library is distributed in the hope that it will be useful, // but WITHOUT ANY WARRANTY; without even the implied warranty of // MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the // GNU Lesser General Public License for more details. // // You should have received a copy of the GNU Lesser General Public License // along with the go-ethereum library. If not, see . package trie import ( "fmt" hdb "github.com/harmony-one/harmony/db" "github.com/simple-rules/harmony-benchmark/db" "io" "sync" "time" "github.com/ethereum/go-ethereum/common" "github.com/ethereum/go-ethereum/log" "github.com/ethereum/go-ethereum/metrics" "github.com/ethereum/go-ethereum/rlp" ) var ( memcacheFlushTimeTimer = metrics.NewRegisteredResettingTimer("trie/memcache/flush/time", nil) memcacheFlushNodesMeter = metrics.NewRegisteredMeter("trie/memcache/flush/nodes", nil) memcacheFlushSizeMeter = metrics.NewRegisteredMeter("trie/memcache/flush/size", nil) memcacheGCTimeTimer = metrics.NewRegisteredResettingTimer("trie/memcache/gc/time", nil) memcacheGCNodesMeter = metrics.NewRegisteredMeter("trie/memcache/gc/nodes", nil) memcacheGCSizeMeter = metrics.NewRegisteredMeter("trie/memcache/gc/size", nil) memcacheCommitTimeTimer = metrics.NewRegisteredResettingTimer("trie/memcache/commit/time", nil) memcacheCommitNodesMeter = metrics.NewRegisteredMeter("trie/memcache/commit/nodes", nil) memcacheCommitSizeMeter = metrics.NewRegisteredMeter("trie/memcache/commit/size", nil) ) // secureKeyPrefix is the database key prefix used to store trie node preimages. var secureKeyPrefix = []byte("secure-key-") // secureKeyLength is the length of the above prefix + 32byte hash. const secureKeyLength = 11 + 32 // DatabaseReader wraps the Get and Has method of a backing store for the trie. type DatabaseReader interface { // Get retrieves the value associated with key from the database. Get(key []byte) (value []byte, err error) // Has retrieves whether a key is present in the database. Has(key []byte) (bool, error) } // Database is an intermediate write layer between the trie data structures and // the disk database. The aim is to accumulate trie writes in-memory and only // periodically flush a couple tries to disk, garbage collecting the remainder. type Database struct { diskdb hdb.Database // Persistent storage for matured trie nodes nodes map[common.Hash]*cachedNode // Data and references relationships of a node oldest common.Hash // Oldest tracked node, flush-list head newest common.Hash // Newest tracked node, flush-list tail preimages map[common.Hash][]byte // Preimages of nodes from the secure trie seckeybuf [secureKeyLength]byte // Ephemeral buffer for calculating preimage keys gctime time.Duration // Time spent on garbage collection since last commit gcnodes uint64 // Nodes garbage collected since last commit gcsize common.StorageSize // Data storage garbage collected since last commit flushtime time.Duration // Time spent on data flushing since last commit flushnodes uint64 // Nodes flushed since last commit flushsize common.StorageSize // Data storage flushed since last commit nodesSize common.StorageSize // Storage size of the nodes cache (exc. flushlist) preimagesSize common.StorageSize // Storage size of the preimages cache lock sync.RWMutex } // rawNode is a simple binary blob used to differentiate between collapsed trie // nodes and already encoded RLP binary blobs (while at the same time store them // in the same cache fields). type rawNode []byte func (n rawNode) canUnload(uint16, uint16) bool { panic("this should never end up in a live trie") } func (n rawNode) cache() (hashNode, bool) { panic("this should never end up in a live trie") } func (n rawNode) fstring(ind string) string { panic("this should never end up in a live trie") } // rawFullNode represents only the useful data content of a full node, with the // caches and flags stripped out to minimize its data storage. This type honors // the same RLP encoding as the original parent. type rawFullNode [17]node func (n rawFullNode) canUnload(uint16, uint16) bool { panic("this should never end up in a live trie") } func (n rawFullNode) cache() (hashNode, bool) { panic("this should never end up in a live trie") } func (n rawFullNode) fstring(ind string) string { panic("this should never end up in a live trie") } func (n rawFullNode) EncodeRLP(w io.Writer) error { var nodes [17]node for i, child := range n { if child != nil { nodes[i] = child } else { nodes[i] = nilValueNode } } return rlp.Encode(w, nodes) } // rawShortNode represents only the useful data content of a short node, with the // caches and flags stripped out to minimize its data storage. This type honors // the same RLP encoding as the original parent. type rawShortNode struct { Key []byte Val node } func (n rawShortNode) canUnload(uint16, uint16) bool { panic("this should never end up in a live trie") } func (n rawShortNode) cache() (hashNode, bool) { panic("this should never end up in a live trie") } func (n rawShortNode) fstring(ind string) string { panic("this should never end up in a live trie") } // cachedNode is all the information we know about a single cached node in the // memory database write layer. type cachedNode struct { node node // Cached collapsed trie node, or raw rlp data size uint16 // Byte size of the useful cached data parents uint16 // Number of live nodes referencing this one children map[common.Hash]uint16 // External children referenced by this node flushPrev common.Hash // Previous node in the flush-list flushNext common.Hash // Next node in the flush-list } // rlp returns the raw rlp encoded blob of the cached node, either directly from // the cache, or by regenerating it from the collapsed node. func (n *cachedNode) rlp() []byte { if node, ok := n.node.(rawNode); ok { return node } blob, err := rlp.EncodeToBytes(n.node) if err != nil { panic(err) } return blob } // obj returns the decoded and expanded trie node, either directly from the cache, // or by regenerating it from the rlp encoded blob. func (n *cachedNode) obj(hash common.Hash, cachegen uint16) node { if node, ok := n.node.(rawNode); ok { return mustDecodeNode(hash[:], node, cachegen) } return expandNode(hash[:], n.node, cachegen) } // childs returns all the tracked children of this node, both the implicit ones // from inside the node as well as the explicit ones from outside the node. func (n *cachedNode) childs() []common.Hash { children := make([]common.Hash, 0, 16) for child := range n.children { children = append(children, child) } if _, ok := n.node.(rawNode); !ok { gatherChildren(n.node, &children) } return children } // gatherChildren traverses the node hierarchy of a collapsed storage node and // retrieves all the hashnode children. func gatherChildren(n node, children *[]common.Hash) { switch n := n.(type) { case *rawShortNode: gatherChildren(n.Val, children) case rawFullNode: for i := 0; i < 16; i++ { gatherChildren(n[i], children) } case hashNode: *children = append(*children, common.BytesToHash(n)) case valueNode, nil: default: panic(fmt.Sprintf("unknown node type: %T", n)) } } // simplifyNode traverses the hierarchy of an expanded memory node and discards // all the internal caches, returning a node that only contains the raw data. func simplifyNode(n node) node { switch n := n.(type) { case *shortNode: // Short nodes discard the flags and cascade return &rawShortNode{Key: n.Key, Val: simplifyNode(n.Val)} case *fullNode: // Full nodes discard the flags and cascade node := rawFullNode(n.Children) for i := 0; i < len(node); i++ { if node[i] != nil { node[i] = simplifyNode(node[i]) } } return node case valueNode, hashNode, rawNode: return n default: panic(fmt.Sprintf("unknown node type: %T", n)) } } // expandNode traverses the node hierarchy of a collapsed storage node and converts // all fields and keys into expanded memory form. func expandNode(hash hashNode, n node, cachegen uint16) node { switch n := n.(type) { case *rawShortNode: // Short nodes need key and child expansion return &shortNode{ Key: compactToHex(n.Key), Val: expandNode(nil, n.Val, cachegen), flags: nodeFlag{ hash: hash, gen: cachegen, }, } case rawFullNode: // Full nodes need child expansion node := &fullNode{ flags: nodeFlag{ hash: hash, gen: cachegen, }, } for i := 0; i < len(node.Children); i++ { if n[i] != nil { node.Children[i] = expandNode(nil, n[i], cachegen) } } return node case valueNode, hashNode: return n default: panic(fmt.Sprintf("unknown node type: %T", n)) } } // NewDatabase creates a new trie database to store ephemeral trie content before // its written out to disk or garbage collected. func NewDatabase(diskdb hdb.Database) *Database { return &Database{ diskdb: diskdb, nodes: map[common.Hash]*cachedNode{{}: {}}, preimages: make(map[common.Hash][]byte), } } // DiskDB retrieves the persistent storage backing the trie database. func (db *Database) DiskDB() DatabaseReader { return db.diskdb } // InsertBlob writes a new reference tracked blob to the memory database if it's // yet unknown. This method should only be used for non-trie nodes that require // reference counting, since trie nodes are garbage collected directly through // their embedded children. func (db *Database) InsertBlob(hash common.Hash, blob []byte) { db.lock.Lock() defer db.lock.Unlock() db.insert(hash, blob, rawNode(blob)) } // insert inserts a collapsed trie node into the memory database. This method is // a more generic version of InsertBlob, supporting both raw blob insertions as // well ex trie node insertions. The blob must always be specified to allow proper // size tracking. func (db *Database) insert(hash common.Hash, blob []byte, node node) { // If the node's already cached, skip if _, ok := db.nodes[hash]; ok { return } // Create the cached entry for this node entry := &cachedNode{ node: simplifyNode(node), size: uint16(len(blob)), flushPrev: db.newest, } for _, child := range entry.childs() { if c := db.nodes[child]; c != nil { c.parents++ } } db.nodes[hash] = entry // Update the flush-list endpoints if db.oldest == (common.Hash{}) { db.oldest, db.newest = hash, hash } else { db.nodes[db.newest].flushNext, db.newest = hash, hash } db.nodesSize += common.StorageSize(common.HashLength + entry.size) } // insertPreimage writes a new trie node pre-image to the memory database if it's // yet unknown. The method will make a copy of the slice. // // Note, this method assumes that the database's lock is held! func (db *Database) insertPreimage(hash common.Hash, preimage []byte) { if _, ok := db.preimages[hash]; ok { return } db.preimages[hash] = common.CopyBytes(preimage) db.preimagesSize += common.StorageSize(common.HashLength + len(preimage)) } // node retrieves a cached trie node from memory, or returns nil if none can be // found in the memory cache. func (db *Database) node(hash common.Hash, cachegen uint16) node { // Retrieve the node from cache if available db.lock.RLock() node := db.nodes[hash] db.lock.RUnlock() if node != nil { return node.obj(hash, cachegen) } // Content unavailable in memory, attempt to retrieve from disk enc, err := db.diskdb.Get(hash[:]) if err != nil || enc == nil { return nil } return mustDecodeNode(hash[:], enc, cachegen) } // Node retrieves an encoded cached trie node from memory. If it cannot be found // cached, the method queries the persistent database for the content. func (db *Database) Node(hash common.Hash) ([]byte, error) { // Retrieve the node from cache if available db.lock.RLock() node := db.nodes[hash] db.lock.RUnlock() if node != nil { return node.rlp(), nil } // Content unavailable in memory, attempt to retrieve from disk return db.diskdb.Get(hash[:]) } // preimage retrieves a cached trie node pre-image from memory. If it cannot be // found cached, the method queries the persistent database for the content. func (db *Database) preimage(hash common.Hash) ([]byte, error) { // Retrieve the node from cache if available db.lock.RLock() preimage := db.preimages[hash] db.lock.RUnlock() if preimage != nil { return preimage, nil } // Content unavailable in memory, attempt to retrieve from disk return db.diskdb.Get(db.secureKey(hash[:])) } // secureKey returns the database key for the preimage of key, as an ephemeral // buffer. The caller must not hold onto the return value because it will become // invalid on the next call. func (db *Database) secureKey(key []byte) []byte { buf := append(db.seckeybuf[:0], secureKeyPrefix...) buf = append(buf, key...) return buf } // Nodes retrieves the hashes of all the nodes cached within the memory database. // This method is extremely expensive and should only be used to validate internal // states in test code. func (db *Database) Nodes() []common.Hash { db.lock.RLock() defer db.lock.RUnlock() var hashes = make([]common.Hash, 0, len(db.nodes)) for hash := range db.nodes { if hash != (common.Hash{}) { // Special case for "root" references/nodes hashes = append(hashes, hash) } } return hashes } // Reference adds a new reference from a parent node to a child node. func (db *Database) Reference(child common.Hash, parent common.Hash) { db.lock.RLock() defer db.lock.RUnlock() db.reference(child, parent) } // reference is the private locked version of Reference. func (db *Database) reference(child common.Hash, parent common.Hash) { // If the node does not exist, it's a node pulled from disk, skip node, ok := db.nodes[child] if !ok { return } // If the reference already exists, only duplicate for roots if db.nodes[parent].children == nil { db.nodes[parent].children = make(map[common.Hash]uint16) } else if _, ok = db.nodes[parent].children[child]; ok && parent != (common.Hash{}) { return } node.parents++ db.nodes[parent].children[child]++ } // Dereference removes an existing reference from a root node. func (db *Database) Dereference(root common.Hash) { // Sanity check to ensure that the meta-root is not removed if root == (common.Hash{}) { log.Error("Attempted to dereference the trie cache meta root") return } db.lock.Lock() defer db.lock.Unlock() nodes, storage, start := len(db.nodes), db.nodesSize, time.Now() db.dereference(root, common.Hash{}) db.gcnodes += uint64(nodes - len(db.nodes)) db.gcsize += storage - db.nodesSize db.gctime += time.Since(start) memcacheGCTimeTimer.Update(time.Since(start)) memcacheGCSizeMeter.Mark(int64(storage - db.nodesSize)) memcacheGCNodesMeter.Mark(int64(nodes - len(db.nodes))) log.Debug("Dereferenced trie from memory database", "nodes", nodes-len(db.nodes), "size", storage-db.nodesSize, "time", time.Since(start), "gcnodes", db.gcnodes, "gcsize", db.gcsize, "gctime", db.gctime, "livenodes", len(db.nodes), "livesize", db.nodesSize) } // dereference is the private locked version of Dereference. func (db *Database) dereference(child common.Hash, parent common.Hash) { // Dereference the parent-child node := db.nodes[parent] if node.children != nil && node.children[child] > 0 { node.children[child]-- if node.children[child] == 0 { delete(node.children, child) } } // If the child does not exist, it's a previously committed node. node, ok := db.nodes[child] if !ok { return } // If there are no more references to the child, delete it and cascade if node.parents > 0 { // This is a special cornercase where a node loaded from disk (i.e. not in the // memcache any more) gets reinjected as a new node (short node split into full, // then reverted into short), causing a cached node to have no parents. That is // no problem in itself, but don't make maxint parents out of it. node.parents-- } if node.parents == 0 { // Remove the node from the flush-list switch child { case db.oldest: db.oldest = node.flushNext db.nodes[node.flushNext].flushPrev = common.Hash{} case db.newest: db.newest = node.flushPrev db.nodes[node.flushPrev].flushNext = common.Hash{} default: db.nodes[node.flushPrev].flushNext = node.flushNext db.nodes[node.flushNext].flushPrev = node.flushPrev } // Dereference all children and delete the node for _, hash := range node.childs() { db.dereference(hash, child) } delete(db.nodes, child) db.nodesSize -= common.StorageSize(common.HashLength + int(node.size)) } } // Cap iteratively flushes old but still referenced trie nodes until the total // memory usage goes below the given threshold. func (db *Database) Cap(limit common.StorageSize) error { // Create a database batch to flush persistent data out. It is important that // outside code doesn't see an inconsistent state (referenced data removed from // memory cache during commit but not yet in persistent storage). This is ensured // by only uncaching existing data when the database write finalizes. db.lock.RLock() nodes, storage, start := len(db.nodes), db.nodesSize, time.Now() batch := db.diskdb.NewBatch() // db.nodesSize only contains the useful data in the cache, but when reporting // the total memory consumption, the maintenance metadata is also needed to be // counted. For every useful node, we track 2 extra hashes as the flushlist. size := db.nodesSize + common.StorageSize((len(db.nodes)-1)*2*common.HashLength) // If the preimage cache got large enough, push to disk. If it's still small // leave for later to deduplicate writes. flushPreimages := db.preimagesSize > 4*1024*1024 if flushPreimages { for hash, preimage := range db.preimages { if err := batch.Put(db.secureKey(hash[:]), preimage); err != nil { log.Error("Failed to commit preimage from trie database", "err", err) db.lock.RUnlock() return err } if batch.ValueSize() > hdb.IdealBatchSize { if err := batch.Write(); err != nil { db.lock.RUnlock() return err } batch.Reset() } } } // Keep committing nodes from the flush-list until we're below allowance oldest := db.oldest for size > limit && oldest != (common.Hash{}) { // Fetch the oldest referenced node and push into the batch node := db.nodes[oldest] if err := batch.Put(oldest[:], node.rlp()); err != nil { db.lock.RUnlock() return err } // If we exceeded the ideal batch size, commit and reset if batch.ValueSize() >= hdb.IdealBatchSize { if err := batch.Write(); err != nil { log.Error("Failed to write flush list to disk", "err", err) db.lock.RUnlock() return err } batch.Reset() } // Iterate to the next flush item, or abort if the size cap was achieved. Size // is the total size, including both the useful cached data (hash -> blob), as // well as the flushlist metadata (2*hash). When flushing items from the cache, // we need to reduce both. size -= common.StorageSize(3*common.HashLength + int(node.size)) oldest = node.flushNext } // Flush out any remainder data from the last batch if err := batch.Write(); err != nil { log.Error("Failed to write flush list to disk", "err", err) db.lock.RUnlock() return err } db.lock.RUnlock() // Write successful, clear out the flushed data db.lock.Lock() defer db.lock.Unlock() if flushPreimages { db.preimages = make(map[common.Hash][]byte) db.preimagesSize = 0 } for db.oldest != oldest { node := db.nodes[db.oldest] delete(db.nodes, db.oldest) db.oldest = node.flushNext db.nodesSize -= common.StorageSize(common.HashLength + int(node.size)) } if db.oldest != (common.Hash{}) { db.nodes[db.oldest].flushPrev = common.Hash{} } db.flushnodes += uint64(nodes - len(db.nodes)) db.flushsize += storage - db.nodesSize db.flushtime += time.Since(start) memcacheFlushTimeTimer.Update(time.Since(start)) memcacheFlushSizeMeter.Mark(int64(storage - db.nodesSize)) memcacheFlushNodesMeter.Mark(int64(nodes - len(db.nodes))) log.Debug("Persisted nodes from memory database", "nodes", nodes-len(db.nodes), "size", storage-db.nodesSize, "time", time.Since(start), "flushnodes", db.flushnodes, "flushsize", db.flushsize, "flushtime", db.flushtime, "livenodes", len(db.nodes), "livesize", db.nodesSize) return nil } // Commit iterates over all the children of a particular node, writes them out // to disk, forcefully tearing down all references in both directions. // // As a side effect, all pre-images accumulated up to this point are also written. func (db *Database) Commit(node common.Hash, report bool) error { // Create a database batch to flush persistent data out. It is important that // outside code doesn't see an inconsistent state (referenced data removed from // memory cache during commit but not yet in persistent storage). This is ensured // by only uncaching existing data when the database write finalizes. db.lock.RLock() start := time.Now() batch := db.diskdb.NewBatch() // Move all of the accumulated preimages into a write batch for hash, preimage := range db.preimages { if err := batch.Put(db.secureKey(hash[:]), preimage); err != nil { log.Error("Failed to commit preimage from trie database", "err", err) db.lock.RUnlock() return err } if batch.ValueSize() > hdb.IdealBatchSize { if err := batch.Write(); err != nil { return err } batch.Reset() } } // Move the trie itself into the batch, flushing if enough data is accumulated nodes, storage := len(db.nodes), db.nodesSize if err := db.commit(node, batch); err != nil { log.Error("Failed to commit trie from trie database", "err", err) db.lock.RUnlock() return err } // Write batch ready, unlock for readers during persistence if err := batch.Write(); err != nil { log.Error("Failed to write trie to disk", "err", err) db.lock.RUnlock() return err } db.lock.RUnlock() // Write successful, clear out the flushed data db.lock.Lock() defer db.lock.Unlock() db.preimages = make(map[common.Hash][]byte) db.preimagesSize = 0 db.uncache(node) memcacheCommitTimeTimer.Update(time.Since(start)) memcacheCommitSizeMeter.Mark(int64(storage - db.nodesSize)) memcacheCommitNodesMeter.Mark(int64(nodes - len(db.nodes))) logger := log.Info if !report { logger = log.Debug } logger("Persisted trie from memory database", "nodes", nodes-len(db.nodes)+int(db.flushnodes), "size", storage-db.nodesSize+db.flushsize, "time", time.Since(start)+db.flushtime, "gcnodes", db.gcnodes, "gcsize", db.gcsize, "gctime", db.gctime, "livenodes", len(db.nodes), "livesize", db.nodesSize) // Reset the garbage collection statistics db.gcnodes, db.gcsize, db.gctime = 0, 0, 0 db.flushnodes, db.flushsize, db.flushtime = 0, 0, 0 return nil } // commit is the private locked version of Commit. func (db *Database) commit(hash common.Hash, batch db.Batch) error { // If the node does not exist, it's a previously committed node node, ok := db.nodes[hash] if !ok { return nil } for _, child := range node.childs() { if err := db.commit(child, batch); err != nil { return err } } if err := batch.Put(hash[:], node.rlp()); err != nil { return err } // If we've reached an optimal batch size, commit and start over if batch.ValueSize() >= hdb.IdealBatchSize { if err := batch.Write(); err != nil { return err } batch.Reset() } return nil } // uncache is the post-processing step of a commit operation where the already // persisted trie is removed from the cache. The reason behind the two-phase // commit is to ensure consistent data availability while moving from memory // to disk. func (db *Database) uncache(hash common.Hash) { // If the node does not exist, we're done on this path node, ok := db.nodes[hash] if !ok { return } // Node still exists, remove it from the flush-list switch hash { case db.oldest: db.oldest = node.flushNext db.nodes[node.flushNext].flushPrev = common.Hash{} case db.newest: db.newest = node.flushPrev db.nodes[node.flushPrev].flushNext = common.Hash{} default: db.nodes[node.flushPrev].flushNext = node.flushNext db.nodes[node.flushNext].flushPrev = node.flushPrev } // Uncache the node's subtries and remove the node itself too for _, child := range node.childs() { db.uncache(child) } delete(db.nodes, hash) db.nodesSize -= common.StorageSize(common.HashLength + int(node.size)) } // Size returns the current storage size of the memory cache in front of the // persistent database layer. func (db *Database) Size() (common.StorageSize, common.StorageSize) { db.lock.RLock() defer db.lock.RUnlock() // db.nodesSize only contains the useful data in the cache, but when reporting // the total memory consumption, the maintenance metadata is also needed to be // counted. For every useful node, we track 2 extra hashes as the flushlist. var flushlistSize = common.StorageSize((len(db.nodes) - 1) * 2 * common.HashLength) return db.nodesSize + flushlistSize, db.preimagesSize } // verifyIntegrity is a debug method to iterate over the entire trie stored in // memory and check whether every node is reachable from the meta root. The goal // is to find any errors that might cause memory leaks and or trie nodes to go // missing. // // This method is extremely CPU and memory intensive, only use when must. func (db *Database) verifyIntegrity() { // Iterate over all the cached nodes and accumulate them into a set reachable := map[common.Hash]struct{}{{}: {}} for child := range db.nodes[common.Hash{}].children { db.accumulate(child, reachable) } // Find any unreachable but cached nodes unreachable := []string{} for hash, node := range db.nodes { if _, ok := reachable[hash]; !ok { unreachable = append(unreachable, fmt.Sprintf("%x: {Node: %v, Parents: %d, Prev: %x, Next: %x}", hash, node.node, node.parents, node.flushPrev, node.flushNext)) } } if len(unreachable) != 0 { panic(fmt.Sprintf("trie cache memory leak: %v", unreachable)) } } // accumulate iterates over the trie defined by hash and accumulates all the // cached children found in memory. func (db *Database) accumulate(hash common.Hash, reachable map[common.Hash]struct{}) { // Mark the node reachable if present in the memory cache node, ok := db.nodes[hash] if !ok { return } reachable[hash] = struct{}{} // Iterate over all the children and accumulate them too for _, child := range node.childs() { db.accumulate(child, reachable) } }